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| Arguello Boulevard Gate | No 301 | 1896 | |
| Broadway Entrance | No 578 | 1896 | |
| Lombard Street Entrance | No 575 | 1896 | |
| Presidio Boulevard Entrance | No 574 | 1896 | |
| S. Domingo Bronze Cannon | | 1628 | |
| Baker Beach | Battery Chamberlin | No 1621 | 1902 | NRHP Listing |
| Baker Beach | Battery Commander's Station | Bldg 1622 | 1904 | Erected to control Battery Chamberlin's four guns. |
| Baker Beach | Battery Crosby | No 1630 | 1900 | Partially buried reinforced-concrete Endicott-period battery for two 6-inch disappearing guns |
| Baker Beach | Old Mine Casemate | No 1600 | 1912 | Built to control one of the submarine mine fields outside the Golden Gate. |
| Cemetery and Cavalry Complex | Battery Blaney | No 635 | 1901 | Three gun emplacements just north of the San Francisco National Cemetery |
| Cemetery and Cavalry Complex | Electrical Substation | Bldg 680 | 1908 | |
| Cemetery and Cavalry Complex | Enlisted Barracks with Mess | Bldg 682 | 1902 | |
| Cemetery and Cavalry Complex | Stables | Bldgs 661-663 | 1911 | |
| Cemetery and Cavalry Complex | Stables | Bldgs 667-668 | 1913 | |
| Crissy Field | Battery Sherwood | No 636 | 1899 | Structure flanked by two elevated command and observation posts, reached by stairways. Notable features include massive buttresses, elevated walkways, underground magazines and plotting stations, and original solid-wood doors. |
| Crissy Field | Boathouse, Fort Point Life Saving Station | Bldg 1902 | 1889 | |
| Crissy Field | Station-Keeper's Residence, Fort Point Life Saving Station | Bldg 1901 | 1889 | |
| Fort Point | Battery Boutelle | No 1651 | 1900 | |
| Fort Point | Battery Godfrey | No 1647 | 1892 | |
| Fort Point | Battery Lancaster | No Number | 1898 | The only heavy-caliber guns at the Presidio that could bear directly on the Golden Gate Strait |
| Fort Point | Battery Marcus Miller | No 1660 | 1891 | First Endicott-type gun emplacement to be undertaken around San Francisco Harbor |
| Fort Point | Fire Control Station | Bldg 1663 | 1911 | |
| Fort Point | Fire Control Station | Bldg 1664 | 1911 | |
| Fort Point | Fire Control Station for Battery Godfrey | Bldg 1662 | 1911 | |
| Fort Point | Mine Loading Houses | Bldgs 985 and 986 | 1908 | |
| Fort Point | Mine Storehouse | Bldg 979 | 1908 | |
| Fort Point | Plumbing Shop | Bldg 989 | 1909 | |
| Fort Point | Warehouse | Bldg 983 | 1908 | |
| Fort Winfield Scott | Battery Cranston | No 1661 | 1897 | A pair of 10-inch guns on Model 1896 on disappearing carriages |
| Fort Winfield Scott | Battery Dynamite | No 1399 | 1894 | One of two coastal batteries in the US to mount experimental dynamite guns which used compressed air to fire charges of high explosive |
| Fort Winfield Scott | Battery Howe-Wagner | No 1287 | 1893 | |
| Fort Winfield Scott | Battery McKinnon-Stotsenberg | No 1430 | 1897 | Originally mounted sixteen 12-inch mortars in four gun pits arranged in a linear formation. |
| Fort Winfield Scott | Battery Saffold | No 1354 | 1896 | Two 12-inch guns on Model 1896 on non-disappearing carriages |
| Fort Winfield Scott | Fort Winfield Scott Headquarters | Bldg 1201 | 1910 | |
| Fort Winfield Scott | Fort Winfield Scott Parade Ground | No 1223 | 1909 | |
| Fort Winfield Scott | Ordnance Repair Shop | Bldg 1339 | 1900 | |
| Letterman Complex | Animal House | Bldg 1056 | 1910 | House laboratory animals used at Letterman General Hospital |
| Letterman Complex | Detention Ward | Bldg 1051 | 1909 | Early example on post of the use of reinforced concrete construction |
| Letterman Complex | Officers' Family Housing | Bldg 1000 | 1902 | |
| Letterman Complex | Officers' Family Housing | Bldg 1001 | 1902 | |
| Letterman Complex | Officers' Family Housing | Bldg 1002 | 1908 | Little altered save for enclosure of the veranda and porch after 1910 |
| Letterman Complex | Officers' Family Housing | Bldgs 1003 and 1004 | 1908 | Little modified save for enclosure of the verandas |
| Main Post | Barracks | Bldgs 86 and 87 | 1862 | Originally a barracks then a wagon shop |
| Main Post | Barracks | Bldg 36 | 1885 | |
| Main Post | Enlisted Barracks with Mess | Bldg 35 | 1912 | Largest barracks on Post at the time of its construction. Became 9th Corps Area Headquarters offices about 1921 and later served as 4th Army Headquarters. |
| Main Post | Garrison Chapel | Bldg 45 | 1864 | |
| Main Post | Hospital | Bldg 2 | 1863 | |
| Main Post | Magazine | Bldg 95 | 1863 | Built of local stone |
| Main Post | Main Parade Ground | No 94 | 1893 | |
| Main Post | Officers' Family Housing | Bldg 4 | 1879 | Similar to buildings 5-16 |
| Main Post | Officers' Family Housing | Bldgs 5-16 | 1862 | Each cottage housed three officers. |
| Main Post | Officers' Family Housing | Bldg 49 | 1882 | Originally a schoolhouse, remodeled in the Spanish Colobnioal style after 1942 |
| Main Post | Officers' Family Housing | Bldgs 56-59 | 1885 | Among the few Presidio buildings with Stick Style and Queen Anne decorative features reflecting the aesthetic emphasis in Presidio architecture and planning by the 1880s |
| Main Post | Officers' Family Housing | Bldgs 51 and 54 | 1889 | Modest houses perhaps patterned after buildings at Fort Thomas in the Arizona Territory none of which survives |
| Main Post | Pershing Hall | Bldg 42 | 1903 | Constructed as as bachelor officers' quarters |
| Main Post | Post Trader | Bldg 116 | 1885 | Forerunner of the modern post exchange and commissary |